read.phylip: read.phylip

In treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

Description

parsing phylip tree format

Usage

read.phylip(file)

Arguments

file	phylip file

Value

an instance of 'phylip'

Author(s)

Guangchuang Yu

Examples

phyfile <- system.file("extdata", "sample.phy", package="treeio")
read.phylip(phyfile)

Example output

'phylip' S4 object that stored information of
	 '/usr/local/lib/R/site-library/treeio/extdata/sample.phy'.

...@ tree: 
Phylogenetic tree with 15 tips and 13 internal nodes.

Tip labels:
	K, N, D, L, J, G, ...

Unrooted; no branch lengths.

with sequence alignment available (15 sequences of length 2148)

treeio documentation built on Nov. 21, 2020, 2:01 a.m.