Description Usage Value Author(s)
A GRange object taSNP
contains trait-associated SNPs from dbGaP and NHGRI downloaded from Association Results Browser.
1 |
The data frame taSNP
contains the following columns
Trait |
Trait |
Trait Class |
Trait class which is formed based on the phenotype tree. Close traits are grouped together to form one class |
SNP_ID |
SNP rs number |
p.value |
GWAS SNP p-value |
seqnames |
Chromosome |
ranges |
Chromosome position |
Context |
SNP functional class |
GENE_NAME |
Nearest gene name |
GENE_START |
Gene start genomic position |
GENE_END |
Gene end genomic position |
GENE_STRAND |
Gene strand |
Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.