otherStrand: Return the name of the opposite strand
In tilingArray: Transcript mapping with high-density oligonucleotide tiling arrays
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Return the name of the opposite strand
Usage
1
otherStrand(x)
Arguments
x
Character vector whose elements are "+" or "-".
Details
This is a rather trivial convenience function.
An alternative would be to code strands with integers -1 and
+1, in which case the inversion would be a trivial builtin
operation. However, many genomic databases and input data files use
the character string / factor notation.
Value
Character vector of same length as x, with strands reversed.
Author(s)
W. Huber <huber@ebi.ac.uk>
Examples
1
otherStrand(c("+", "-"))
tilingArray documentation built on Nov. 8, 2020, 10:59 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Return the name of the opposite strand
Usage
1 | otherStrand(x)
|
Arguments
x |
Character vector whose elements are "+" or "-". |
Details
This is a rather trivial convenience function.
An alternative would be to code strands with integers -1 and
+1, in which case the inversion would be a trivial builtin
operation. However, many genomic databases and input data files use
the character string / factor notation.
Value
Character vector of same length as x, with strands reversed.
Author(s)
W. Huber <huber@ebi.ac.uk>
Examples
1 | otherStrand(c("+", "-"))
|
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