pbmc_small_nested_interactions: Intercellular ligand-receptor interactions for 38 ligands...
In tidySingleCellExperiment: Brings SingleCellExperiment to the Tidyverse

Description Usage Format Source

A dataset containing ligand-receptor interactions withibn a sample. There are 38 ligands from a single cell cluster versus 35 receptors in 6 other clusters.

1	data(pbmc_small_nested_interactions)

A tibble containing 100 rows and 9 columns. Cells are a subsample of the PBMC dataset of 2,700 single cells. Cell interactions were identified with SingleCellSignalR.

sample: sample identifier
ligand: cluster and ligand identifier
receptor: cluster and receptor identifier
ligand.name: ligand name
receptor.name: receptor name
origin: cluster containing ligand
destination: cluster containing receptor
interaction.type: type of interation, paracrine or autocrine
LRscore: interaction score