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inst/extdata/docopt.R/rsubread/rsubread_idx.doc.R
In systemPipeR: systemPipeR: NGS workflow and report generation environment
'Rsubread_idx
Usage:
Rsubread_idx.doc.R --reference <file>
Options:
--reference <file> Named character vector containing paths to the reference sequence.
' -> doc
library(docopt)
library(systemPipeR)
library(Rsubread)
opts <- docopt(doc)
print(opts$reference)
buildindex(basename=opts$reference, reference=opts$reference)
print("Index created successfully")
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systemPipeR documentation built on Jan. 26, 2021, 2 a.m.
R Package Documentation
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'Rsubread_idx
Usage:
Rsubread_idx.doc.R --reference <file>
Options:
--reference <file> Named character vector containing paths to the reference sequence.
' -> doc
library(docopt)
library(systemPipeR)
library(Rsubread)
opts <- docopt(doc)
print(opts$reference)
buildindex(basename=opts$reference, reference=opts$reference)
print("Index created successfully")
Try the systemPipeR package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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