sysargs: SYSargs accessor methods

In systemPipeR: systemPipeR: NGS workflow and report generation environment

Description

Methods to access information from SYSargs object.

Usage

	sysargs(x)

Arguments

x	object of class SYSargs

Value

various outputs

Author(s)

Thomas Girke

Examples

## Construct SYSargs object from param and targets files 
param <- system.file("extdata", "hisat2.param", package="systemPipeR")
targets <- system.file("extdata", "targets.txt", package="systemPipeR")
args <- systemArgs(sysma=param, mytargets=targets)
args
names(args); modules(args); cores(args); outpaths(args); sysargs(args)

systemPipeR documentation built on Jan. 26, 2021, 2 a.m.