kersplatEstimate: Estimate Kersplat simulation parameters
In splatter: Simple Simulation of Single-cell RNA Sequencing Data

Description Usage Arguments Value See Also Examples

Estimate simulation parameters for the Kersplat simulation from a real dataset. See the individual estimation functions for more details on how this is done.

kersplatEstimate(counts, params = newKersplatParams(), verbose = TRUE)

## S3 method for class 'SingleCellExperiment'
kersplatEstimate(counts, params = newKersplatParams(), verbose = TRUE)

## S3 method for class 'matrix'
kersplatEstimate(counts, params = newKersplatParams(), verbose = TRUE)

`counts`	either a counts matrix or a SingleCellExperiment object containing count data to estimate parameters from.
`params`	KersplatParams object to store estimated values in.
`verbose`	logical. Whether to print progress messages.

KersplatParams object containing the estimated parameters.

kersplatEstMean, kersplatEstBCV, kersplatEstLib

if (requireNamespace("igraph", quietly = TRUE)) {
    # Load example data
    library(scater)
    set.seed(1)
    sce <- mockSCE()

    params <- kersplatEstimate(sce)
    params
}