slingParams: Methods for parameters used by Slingshot

In slingshot: Tools for ordering single-cell sequencing

Description

Extracts additional control parameters used by Slingshot in lineage inference and fitting simultaneous principal curves.

Usage

slingParams(x)

## S4 method for signature 'SlingshotDataSet'
slingParams(x)

## S4 method for signature 'SingleCellExperiment'
slingParams(x)

Arguments

x	an object containing slingshot output.

Value

the list of additional parameters used by Slingshot.

Methods (by class)

• SlingshotDataSet: returns the list of additional parameters used by Slingshot from a SlingshotDataSet object.

• SingleCellExperiment: returns the list of additional parameters used by Slingshot from a SingleCellExperiment object.

Examples

data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
sds <- slingshot(rd, cl, start.clus = '5')
slingParams(sds)

slingshot documentation built on Nov. 8, 2020, 5:51 p.m.