calcGseaStatBatchCpp: Calculates GSEA statistic valus for all gene sets in...
In signatureSearch: Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Description
Usage
Arguments
Value
Description
Takes O(n + mKlogK) time, where n is the number of genes, m is the number of gene sets,
and k is the mean gene set size.
Usage
1
calcGseaStatBatchCpp(stats, selectedGenes, geneRanks)
Arguments
stats
Numeric vector of gene-level statistics sorted in decreasing order
selectedGenes
List of integer vector with integer gene IDs (from 1 to n)
geneRanks
Integer vector of gene ranks
Value
Numeric vector of GSEA statistics of the same length as 'selectedGenes' list
signatureSearch documentation built on April 16, 2021, 6 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Takes O(n + mKlogK) time, where n is the number of genes, m is the number of gene sets, and k is the mean gene set size.
Usage
1 | calcGseaStatBatchCpp(stats, selectedGenes, geneRanks)
|
Arguments
stats |
Numeric vector of gene-level statistics sorted in decreasing order |
selectedGenes |
List of integer vector with integer gene IDs (from 1 to n) |
geneRanks |
Integer vector of gene ranks |
Value
Numeric vector of GSEA statistics of the same length as 'selectedGenes' list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.