get_dblCalls_ALL: Wrapper for getting doublet calls

In scds: In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data

Description

Wrapper for getting doublet calls

Usage

get_dblCalls_ALL(scrs_real, scrs_sim, rel_loss = 1)

Arguments

scrs_real	numeric vector, the scores for the real/original data
scrs_sim	numeric vector, the scores for the artificial doublets
rel_loss	numeric scalar, relative weight of a false positive classification compared with a false negative. Default:1 (same loss for fp and fn).

Value

numeric, matrix containing the (estimated) number of doublets, the score threshold and the fraction of artificial doublets missed (false negative rate, of sorts) as columns and four types of estimating: "youden", "balanced" and a false negative rate of artificial doublets of 0.1 and 0.01, respecitvely.

scds documentation built on Nov. 8, 2020, 7:01 p.m.