scTGIF-package: Cell type annotation for unannotated single-cell RNA-Seq data

In scTGIF: Cell type annotation for unannotated single-cell RNA-Seq data

Description

scTGIF connects the cells and the related gene functions without cell type label.

Details

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calcTGIF function calculates what kind of cellular patterns and functional patterns are contained in single-cell RNA-seq data and reportTGIF function generates report of analytic result. The algorithm is based on joint NMF, which is implemented in nnTensor package.

Author(s)

Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <[e-mail]>

References

Dominic Grun, Anna Lyubimova, Lennart Kester, Kay Wiebrands, Onur Basak, Nobuo Sasaki, Hans Clevers, Alexander van Oudenaarden (2015) Single-cell messenger RNA sequencing reveals rare intestinal cell types. Nature, 525: 251-255

scTGIF documentation built on Nov. 8, 2020, 5:24 p.m.