plotsamExplorer: Plots the results of output dataframe object.

In samExploreR: samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

Description

Boxplot results between sequence-depth and number of differentially expressed genes.

Usage

plotsamExplorer(dat, save = FALSE, filename = NULL, p.depth = 0.9, 
font.size = 3.5, anova = TRUE, x.lab=NULL, y.lab=NULL, leg.lab=NULL)

Arguments

dat	is a dataframe object, which consists three columns strictly labelled as: "Label", "Variable" and "Value".
save	is a logical value to save plot as a pdf.
filename	is a character to assign filename, if a user want to save the plot.
p.depth	is a numeric value for anova test to be performed for number differentially expressed genes of different sequence-depths.
font.size	is a numeric value to set font size of the plot.
anova	is a logical value for anova test to be performed for number differentially expressed genes of different sequence-depths.
x.lab	is a string value to assign a label for x-axis.
y.lab	is a string value to assign a label for y-axis.
leg.lab	is a string vector assigns lables for legends in the plot.

Value

Generates a plot in a pdf format.

Author(s)

Frank-Emmert Streib, Shailesh Tripathi, Aleksei sputnikov

Examples

    data("df_sole")
    data("df_intersect")

    plotsamExplorer(df_sole,save=TRUE,filename="ss",p.depth=.9,
    font.size=4, anova=TRUE)
    plotsamExplorer(df_intersect,save=TRUE,filename="ss",p.depth=.9,
    font.size=4, anova=FALSE)

samExploreR documentation built on Nov. 8, 2020, 5:45 p.m.