parseGff3: parseGff3 - parsing gff3 file format

In rnaSeqMap: rnaSeq secondary analyses

Description

Parses gff3 file into genes, transcripts and exons.

Usage

parseGff3(filegff, fileg="genes.txt", filet="transcripts.txt", filee="exons.txt", nofiles=FALSE)

Arguments

filegff	Input file in GFF3 format
fileg	Filename for output: genes
filet	Filename for output: transcripts
filee	Filename for output: exons
nofiles	Flag: just optput list, no files

Value

List with elements "genes", "transcripts", "exons" with appropriate tables.

Author(s)

Michal Okoniewski, Anna Lesniewska

Examples

#  if (xmapConnected())  
#  {
#     parseGff3("Athaliana.gff3")
#  }

rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.