README.md

In rnaEditr: Statistical analysis of RNA editing sites and hyper-editing regions

rnaEditr: an R package for RNA-seq data analysis

Description

rnaEditr is an R package that identifies genomic sites and genomic regions that are differentially edited in RNA-seq datasets. rnaEditr can analyze studies with continuous, binary, or survival phenotypes, along with multiple covariates and/or interaction effects. To identify hyper-edited regions, rnaEditr first determines co-edited sub-regions without using any phenotype information. Next, rnaEditr tests association between RNA editing levels within the co-edited regions with binary, continuous or survival phenotypes.

Installation

The latest version can be installed by

if(!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rnaEditr")

After installation, the rnaEditr package can be loaded into R using:

library(rnaEditr)

rnaEditr documentation built on Nov. 8, 2020, 8:26 p.m.