riboData-class: Class "riboData"

In riboSeqR: Analysis of sequencing data from ribosome profiling experiments

Description

The riboData class contains a list of GRanges objects containing ribosome footprint alignment data, a factor defining the replicate structure of the samples involved, and (optionally) a list of GRanges objects containing RNA-seq alignment data (paired with the ribosome footprint data). It will generally be created by the ‘readRibodata’ function and not directly by the user.

Slots

riboGR:

List of "GRanges" objects (one for each sequenced sample) describing the alignments of ribosomal footprint data to a transcriptome.

rnaGR:

List of "GRanges" objects (one for each sequenced sample, paired with ‘riboGR’ slot) describing the alignments of RNA-seq data to a transcriptome.

replicates:

A factor defining the replicate structure of the samples for which data are held. Replicate samples will have the same level in this factor.

Methods

No methods are currently defined for this class.

Author(s)

Thomas J. Hardcastle

riboSeqR documentation built on Nov. 8, 2020, 8:23 p.m.