plotVolcano-methods: Function to draw a plot of the pvalues stored in an 'ExWAS'...
In rexposome: Exposome exploration and outcome data analysis
Description
Usage
Arguments
Value
See Also
Description
This function draws a sort of manhattan plots using the p-value of the
association of the exposures with phenotypes of an ExWAS object.
Usage
1
plotVolcano(x, p.value = -log10(0.001), labels, show.effect = FALSE)
Arguments
x
An ExWAS object which effect will be ploted.
p.value
(default "-log10(0.001)") Threshold for P-Value.
labels
(optional) Character vector with the labels for each exposure.
It must be labeled vector.
show.effect
(default FALSE) Applyes an exponential
transformation on the effects of the exposures.
Value
An object of class ggplot.
See Also
exwas as a constructor for ExWAS
objects, extract to obtain a table with the result of
the ExWAS, plotEffect to see or compare effects of
one or two models.
rexposome documentation built on March 13, 2021, 2:01 a.m.
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Description Usage Arguments Value See Also
Description
This function draws a sort of manhattan plots using the p-value of the
association of the exposures with phenotypes of an ExWAS object.
Usage
1 | plotVolcano(x, p.value = -log10(0.001), labels, show.effect = FALSE)
|
Arguments
x |
An |
p.value |
(default |
labels |
(optional) Character vector with the labels for each exposure. It must be labeled vector. |
show.effect |
(default |
Value
An object of class ggplot.
See Also
exwas as a constructor for ExWAS
objects, extract to obtain a table with the result of
the ExWAS, plotEffect to see or compare effects of
one or two models.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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