readControls: Read SomaLogic Sample Submission Controls File
In readat: Functionality to Read and Manipulate SomaLogic ADAT files

Description Usage Arguments Value Input file specification See Also Examples

View source: R/read-sample-submision-input-files.R

Read SomaLogic Sample Submission Controls File

1	readControls(file = "controls.csv")

file

A string denoting the path to an input CSV file. See Input file specification section.

A data.table with 96 rows and 2 columns.

PlatePosition: A letter followed by a number, constructed from the Subarray ("A" for 1, "B" for 2, etc.) and the slide number from 1 to 12.
BarCode: Sample barcode for QC, Calibrator, and Buffer samples, in the form "I" followed by 6 digits.

A CSV file without a header line containing up to 96 rows and two columns as follows.

Plate positions from A1, A2, through to H12.
Barcodes in the form "I" followed by 6 digits.

readSlides, readComments, and readSamples for reading other submission forms and writeSampleSubmissionForm for usage examples.

# See ?writeSampleSubmissionForm for a more complete example
withr::with_dir(
  system.file("extdata", package = "readat"),
  {
    (controls <- readControls())
  }
)