Files in qpgraph

Estimation of genetic and molecular regulatory networks from high-throughput genomics data

README.md tests/runTests.R R/Defunct.R R/eQTLcross-methods.R R/AllGeneric.R R/HMgmm-methods.R R/SsdMatrix.R R/eQTLnetwork-methods.R R/qpSimulate.R R/eQTLnetworkEstimate.R R/UGgmm-methods.R R/qpGraph-methods.R R/qpCItest.R R/Utils.R R/graphParam-methods.R R/qpgraph.R R/eQTLnetworkEstimationParam-methods.R R/AllClass.R R/zzz.R man/qpPCC.Rd man/qpUpdateCliquesRemoving.Rd man/EcoliOxygen.Rd man/eQTLnetwork-class.Rd man/qpK2ParCor.Rd man/eQTLnetworkEstimationParam-class.Rd man/HMgmm-class.Rd man/SsdMatrix-class.Rd man/qpAvgNrr.Rd man/qpPathWeight.Rd man/qpCliqueNumber.Rd man/qpUnifRndAssociation.Rd man/qpPAC.Rd man/qpEdgeNrr.Rd man/qpPlotMap.Rd man/UGgmm-class.Rd man/qpRndGraph.Rd man/qpGenNrr.Rd man/qpRndWishart.Rd man/qpTopPairs.Rd man/qpGetCliques.Rd man/qpHist.Rd man/qpClique.Rd man/qpgraph-package.Rd man/qpImportNrr.Rd man/qpGraphDensity.Rd man/qpG2Sigma.Rd man/qpAllCItests.Rd man/qpPlotNetwork.Rd man/qpFunctionalCoherence.Rd man/qpPrecisionRecall.Rd man/eQTLcross-class.Rd man/qpHTF.Rd man/qpIPF.Rd man/qpCItest.Rd man/qpNrr.Rd man/filterCollinearities.Rd man/eQTLnetworkEstimate.Rd man/graphParam-class.Rd man/qpCov.Rd man/qpGraph-class.Rd man/qpBoundary.Rd man/qpPRscoreThreshold.Rd man/qpAnyGraph.Rd inst/unitTests/test_rgraphBAM.R inst/unitTests/test_qpCItest.R inst/unitTests/test_qpNrr.R inst/snow/RPVMnode.R inst/snow/RMPInode.R inst/snow/RSOCKnode.R inst/snow/RNWSnode.R inst/doc/eQTLnetworks.R inst/doc/eQTLnetworks.pdf inst/doc/BasicUsersGuide.pdf inst/doc/qpgraphSimulate.pdf inst/doc/qpgraphSimulate.R inst/doc/qpTxRegNet.R inst/doc/qpTxRegNet.pdf