kmer_count: Return kmer count per sequence for the length of kmer desired
In qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
Description
Return kmer count per sequence for the length of kmer desired
Usage
1
kmer_count(infile, k, output_file = NA)
Arguments
infile
the object that is the path to gzippped FASTQ file
k
the length of kmer
output_file
File to save plot to. Default NA.
Value
kmers counts per sequence
Examples
1
2
3
4
infile <- system.file("extdata", "10^5_reads_test.fq.gz",
package = "qckitfastq")
km<-kmer_count(infile,k=4)
km[1:20,1:10]
qckitfastq documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Examples
Description
Return kmer count per sequence for the length of kmer desired
Usage
1 | kmer_count(infile, k, output_file = NA)
|
Arguments
infile |
the object that is the path to gzippped FASTQ file |
k |
the length of kmer |
output_file |
File to save plot to. Default NA. |
Value
kmers counts per sequence
Examples
1 2 3 4 | infile <- system.file("extdata", "10^5_reads_test.fq.gz",
package = "qckitfastq")
km<-kmer_count(infile,k=4)
km[1:20,1:10]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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