accessor_methods: Get different features and elements of the 'proDAFit' object

In proDA: Differential Abundance Analysis of Label-Free Mass Spectrometry Data

Description

The functions listed below can all be accessed using the fluent dollar notation (ie. fit$abundances[1:3,1:3]) without any additional parentheses.

Usage

## S4 method for signature 'proDAFit'
abundances(object)

## S4 method for signature 'proDAFit'
design(object, formula = FALSE)

## S4 method for signature 'proDAFit'
hyper_parameters(object)

## S4 method for signature 'proDAFit'
feature_parameters(object)

## S4 method for signature 'proDAFit'
coefficients(object)

## S4 method for signature 'proDAFit'
coefficient_variance_matrices(object)

## S4 method for signature 'proDAFit'
reference_level(object)

## S4 method for signature 'proDAFit'
convergence(object)

Arguments

object	the 'proDAFit' object
formula	specific argument for the design function to get the formula that was used to create the linear model. If no formula was used NULL is returned.

Value

See the documentation of the generics to find out what each method returns

proDA documentation built on Nov. 8, 2020, 5:01 p.m.