repertoires: Two toy examples of sample TCR repertoires.

In powerTCR: Model-Based Comparative Analysis of the TCR Repertoire

Description

This data set gives to toy examples of TCR repertoires. Sample "samp1" contains 1,000 clones with a total of 26,288 sequenced T cells. Sample "samp2" contains 800 clones with a total of 24,267 sequenced T cells. These samples have been sorted from largest to smallest clone size.

Usage

data("repertoires")

Format

The format is:

List of 2 $ samp1: num [1:1000] 1445 451 309 ... $ samp2: num [1:800] 2781 450 447 ...

Examples

data(repertoires)
n1 <- length(repertoires$samp1)
n2 <- length(repertoires$samp2)

# Generates plot on log-log scale
par(mfrow = c(2,1))
plot(log(repertoires$samp1), log(1:n1))
plot(log(repertoires$samp2), log(1:n2))

powerTCR documentation built on March 17, 2021, 6:01 p.m.