plot.syntheticNucReads: Generate a graph of a synthetic nucleosome map containing...
In nucleoSim: Generate synthetic nucleosome maps

Description Usage Arguments Value Author(s) Examples

Generate a graph for a list marked as an syntheticNucReads class

1 2	## S3 method for class 'syntheticNucReads' plot(x, ...)

`x`	a list marked as a `syntheticNucReads` class
`...`	`...` extra arguments passed to the `plot` function

a graph of a synthetic nucleosome map containing forward and reverse reads

Astrid Deschenes, Rawane Samb

## Generate a synthetic map with 20 well-positioned nucleosomes, 5 fuzzy
## nucleosomes and 10 deleted nucleosomes using a Student distribution
## with a variance of 10 for the well-positioned nucleosomes,
## a variance of 20 for the fuzzy nucleosomes and a seed of 15
syntheticNucSample <- syntheticNucReadsFromDist(wp.num = 30, wp.del = 10,
wp.var = 10, fuz.num = 5, fuz.var = 20, rnd.seed = 15,
distr = "Student", offset = 1000)

## Create graph using the synthetic map
plot(syntheticNucSample, xlab="Position", ylab="Coverage")