get.subnets-NetResponseModel-method: get.subnets
In netresponse: Functional Network Analysis

Description Usage Arguments Value Author(s) References Examples

List the detected subnetworks (each is a list of nodes in the corresponding subnetwork).

## S4 method for signature 'NetResponseModel'
get.subnets(
  model,
  get.names = TRUE,
  min.size = 2,
  max.size = Inf,
  min.responses = 2
)

`model`	Output from the detect.responses function. An object of NetResponseModel class.
`get.names`	Logical. Indicate whether to return subnetwork nodes using node names (TRUE) or node indices (FALSE).
`min.size, max.size`	Numeric. Filter out subnetworks whose size is not within the limits specified here.
`min.responses`	Numeric. Filter out subnetworks with less responses (mixture components) than specified here.

A list of subnetworks.

Leo Lahti leo.lahti@iki.fi

Leo Lahti et al.: Global modeling of transcriptional responses in interaction networks. Bioinformatics (2010). See citation('netresponse') for details.

1
2
3

## Load a pre-calculated netresponse model obtained with 
# model <- detect.responses(toydata$emat, toydata$netw, verbose = FALSE)
# data( toydata ); get.subnets(toydata$model)

netresponse documentation built on Nov. 8, 2020, 5:04 p.m.