buildrunBNBedFiles: Reads BED files to produce bionano Bed files

In nanotatoR: nanotatoR: next generation structural variant annotation and classification

Description

Reads BED files to produce bionano Bed files

Usage

buildrunBNBedFiles(bedFile, returnMethod = c("Text", "dataFrame"),
  outdir)

Arguments

bedFile	character. Path to UCSC Bed File.
returnMethod	character. Path to output directory.
outdir	character. Path to output directory.

Value

Data Frame or text file. Contains the gene information.

Examples

bedFile <- system.file("extdata", "Homo_sapiens.Hg19.bed", 
package="nanotatoR")
bed<-buildrunBNBedFiles(bedFile,returnMethod="dataFrame")

nanotatoR documentation built on Nov. 8, 2020, 6:54 p.m.