Files in multiHiCcompare

Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available

README.md R/exportJuicebox.R R/plot_functions.R R/hicexp2.R R/cyclic_loess.R R/HCT116_r2.R R/make_hicexp.R R/fastlo.R R/hg19_cyto.R R/HCT116_r6.R R/classes.R R/HCT116_r4.R R/smartApply.R R/HCT116_r3.R R/topDirs.R R/manhattan.R R/perm_test.R R/hg38_cyto.R R/HCT116_r1.R R/glm.R R/filtering.R R/HCT116_r5.R R/library_scaling.R R/hicexp_diff.R vignettes/multiHiCcompare.Rmd vignettes/juiceboxVisualization.Rmd man/normalized.Rd man/hicexp_diff.Rd man/hic_scale.Rd man/resolution.Rd man/HCT116_r4.Rd man/HCT116_r6.Rd man/hg38_cyto.Rd man/topDirs.Rd man/exportJuicebox.Rd man/hg19_cyto.Rd man/pval_heatmap.Rd man/meta.Rd man/HCT116_r2.Rd man/hic_filter.Rd man/Hicexp-class.Rd man/smartApply.Rd man/show.Rd man/hic_glm.Rd man/fastlo.Rd man/results.Rd man/cyclic_loess.Rd man/manhattan_hicexp.Rd man/hic_exactTest.Rd man/hic_table.Rd man/MD_composite.Rd man/plot_counts.Rd man/perm_test.Rd man/plot_pvals.Rd man/HCT116_r3.Rd man/HCT116_r1.Rd man/make_hicexp.Rd man/MD_hicexp.Rd man/HCT116_r5.Rd man/hicexp2.Rd tests/testthat.R tests/testthat/test_normalization.R tests/testthat/test_comparison.R tests/testthat/test_make_hicexp.R inst/doc/juiceboxVisualization.R inst/doc/multiHiCcompare.Rmd inst/doc/multiHiCcompare.R inst/doc/juiceboxVisualization.Rmd