normalizeMotif: Normalizes a PFM
In motifcounter: R package for analysing TFBSs in DNA sequences

Description Usage Arguments Value Examples

This function normalizes a PFM and optionally adds pseudo-evidence to each entry of the matrix.

1	normalizeMotif(pfm, pseudo = 0.01)

`pfm`	An R matrix that represents a position frequency matrix
`pseudo`	Small numeric pseudo-value that is added to each entry in the PFM in order to ensure strictly positive entries. Default: pseudo = 0.01

A normalized PFM

# Load motif
motiffile = system.file("extdata", "x1.tab", package = "motifcounter")
motif = t(as.matrix(read.table(motiffile)))

# Normalize motif
new_motif = normalizeMotif(motif)