preprocessRaw: Creation of a MethylSet without normalization
In minfi: Analyze Illumina Infinium DNA methylation arrays
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/preprocessRaw.R
Description
Converts the Red/Green channel for an Illumina methylation array into
methylation signal, without using any normalization.
Usage
1
preprocessRaw(rgSet)
Arguments
rgSet
An object of class RGChannelSet.
Details
This function takes the Red and the Green channel of an Illumina
methylation array, together with its associated manifest object and
converts it into a MethylSet containing the methylated and
unmethylated signal.
Value
An object of class MethylSet
Author(s)
Kasper Daniel Hansenkhansen@jhsph.edu.
See Also
RGChannelSet and MethylSet
as well as IlluminaMethylationManifest.
Examples
1
2
3
4
5
6
if (require(minfiData)) {
dat <- preprocessRaw(RGsetEx)
slot(name="preprocessMethod", dat)[1]
}
minfi documentation built on Nov. 8, 2020, 4:53 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/preprocessRaw.R
Description
Converts the Red/Green channel for an Illumina methylation array into methylation signal, without using any normalization.
Usage
1 | preprocessRaw(rgSet)
|
Arguments
rgSet |
An object of class |
Details
This function takes the Red and the Green channel of an Illumina
methylation array, together with its associated manifest object and
converts it into a MethylSet containing the methylated and
unmethylated signal.
Value
An object of class MethylSet
Author(s)
Kasper Daniel Hansenkhansen@jhsph.edu.
See Also
RGChannelSet and MethylSet
as well as IlluminaMethylationManifest.
Examples
1 2 3 4 5 6 | if (require(minfiData)) {
dat <- preprocessRaw(RGsetEx)
slot(name="preprocessMethod", dat)[1]
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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