formatInputMethylData: Permute dataset

In methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Description

Permute dataset and format it to be ready for an analysis

Usage

formatInputMethylData(methylKitData)

Arguments

methylKitData

a list of methylRawList entries. Each methylRawList entry must contain all the methylRaw entries related to one generation (first entry = first generation, second entry = second generation, etc..). The number of generations must correspond to the number of entries in the methylKitData. At least 2 generations must be present to make a permutation analysis. More information can be found in the methylKit package.

Value

a list of methylRawList entries.

Author(s)

Astrid Deschenes, Pascal Belleau

Examples

## Load dataset
data("samplesForTransgenerationalAnalysis")

methylInheritance:::formatInputMethylData(samplesForTransgenerationalAnalysis)

methylInheritance documentation built on Nov. 8, 2020, 8:21 p.m.