get.ucsc.query: Return queries for the UCSC Genome Browser database,...
In metaseqR: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/metaseqr.query.R
Description
Returns an SQL query to be used with a connection to
the UCSC Genome Browser database and fetch metaseqR
supported organism annotations. This query is constructed
based on the data source and data type to be returned.
Usage
1
get.ucsc.query(org, type, refdb="ucsc")
Arguments
org
one of metaseqR supported organisms.
type
either "gene" or "exon".
refdb
one of "ucsc" or "refseq"
to use the UCSC or RefSeq annotation sources
respectively.
Value
A valid SQL query.
Author(s)
Panagiotis Moulos
Examples
1
db.query <- get.ucsc.query("hg18","gene","ucsc")
metaseqR documentation built on Nov. 8, 2020, 5:57 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
View source: R/metaseqr.query.R
Description
Returns an SQL query to be used with a connection to the UCSC Genome Browser database and fetch metaseqR supported organism annotations. This query is constructed based on the data source and data type to be returned.
Usage
1 | get.ucsc.query(org, type, refdb="ucsc")
|
Arguments
org |
one of metaseqR supported organisms. |
type |
either |
refdb |
one of |
Value
A valid SQL query.
Author(s)
Panagiotis Moulos
Examples
1 | db.query <- get.ucsc.query("hg18","gene","ucsc")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.