LCDBtest: Sample DB for LC-MS annotation
In metaMS: MS-based metabolomics annotation pipeline
Description
Usage
Format
Details
Author(s)
See Also
Description
This database has been generated using the exptable dataset to
process the data included in the metaMSdata package.
Usage
1
Format
LCDBtest is a list with three elements:
- Reftable
The initial table used to generate the DB.
- Info
Some info on the DB: date of creation, and settings used.
- DB
A data.frame containing the actual information. See the
details section.
Details
The DB data.frame contains the following fields:
- ChemSpiderID
The Chem spider identifier for the compound.
- compound
A human-readable name for the compound.
- adduct
The output of the CAMERA annotation of the standard file.
- isotopes
The output of the CAMERA annotation of the standard file.
- mz, rt
the mz and rt values.
- maxo
the maxo intensity value for a given feature in
the injection.
- validated
a string which defines the origin of a specific feature.
Author(s)
Pietro Franceschi
See Also
createSTDdbLC, exptable,
FEMsettings
metaMS documentation built on Nov. 8, 2020, 8:21 p.m.
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Description Usage Format Details Author(s) See Also
Description
This database has been generated using the exptable dataset to
process the data included in the metaMSdata package.
Usage
1 |
Format
LCDBtest is a list with three elements:
- Reftable
The initial table used to generate the DB.
- Info
Some info on the DB: date of creation, and settings used.
- DB
A
data.framecontaining the actual information. See the details section.
Details
The DB data.frame contains the following fields:
- ChemSpiderID
The Chem spider identifier for the compound.
- compound
A human-readable name for the compound.
- adduct
The output of the CAMERA annotation of the standard file.
- isotopes
The output of the CAMERA annotation of the standard file.
- mz, rt
the mz and rt values.
- maxo
the
maxointensity value for a given feature in the injection.- validated
a string which defines the origin of a specific feature.
Author(s)
Pietro Franceschi
See Also
createSTDdbLC, exptable,
FEMsettings
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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