biocarta: eQTL geneset enrichment query demo data
In loci2path: Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

Demo Data to show how to perform eQTL-geneset enrichment query.

1	data(loci2path.demo)

An object of class geneSet of length 1.

eqtl.set.list A list of eQTLset objects; eQTL data are collected from GTeX.

biocarta A Geneset object; Geneset are from Broad Institute's MSigDB: curated gene set, category 'cp': BIOCARTA

query.gr A Genomic Region object; Query regions are from immunoBase, crohn's disease.

1	data(loci2path.demo)

loci2path documentation built on Nov. 8, 2020, 6:08 p.m.

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