Description Usage Arguments Value Examples
display the specified track in igv
1 2 | ## S4 method for signature 'igvR'
displayTrack(obj, track, deleteTracksOfSameName = TRUE)
|
obj |
An object of class igvR |
track |
An object of some terminal (leaf) subclass of Track |
deleteTracksOfSameName |
logical, default TRUE |
""
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | if(interactive()){
igv <- igvR()
setGenome(igv, "hg38")
showGenomicRegion(igv, "MEF2C")
base.loc <- 88883100
tbl <- data.frame(chrom=rep("chr5", 3),
start=c(base.loc, base.loc+100, base.loc + 250),
end=c(base.loc + 50, base.loc+120, base.loc+290),
name=c("a", "b", "c"),
score=runif(3),
strand=rep("*", 3),
stringsAsFactors=FALSE)
track <- DataFrameAnnotationTrack("dataframeTest", tbl, color="red",
displayMode="EXPANDED")
displayTrack(igv, track)
}
|
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