readDirectedInteractionsFromCsv: Read directed interactions from csv and create the...

In ibh: Interaction Based Homogeneity for Evaluating Gene Lists

Description

This function reads the directed interactions from a csv file and creates the interaction list. The csv file must contain two names: first gene/protein name, second the interactor.

Usage

readDirectedInteractionsFromCsv(fileName, sepValue, headerValue)

Arguments

fileName	name of the CSV file containing te interactions
sepValue	the same as "sep" in read.csv function,it is the value of the field separator character.
headerValue	whether the CSV file has a header or not, TRUE if the file has a header row, FALSE otherwise

Value

A list containing the interactions. For each gene/protein, the is an entry in the list with "name" containing name of the gen/protein and "interactors" containing the list of genes/proteins interacting with it.

Author(s)

Kircicegi Korkmaz

Examples

	##-interactionList <- readDirectedInteractionsFromCsv("Arabidopsis_BioGRID-.1.72.entrezid.csv",			" ", FALSE);
	

ibh documentation built on Nov. 8, 2020, 7:49 p.m.