Iteratively Adjusted Surrogate Variable Analysis (IA-SVA) is a statistical framework to uncover hidden sources of variation even when these sources are correlated. IA-SVA provides a flexible methodology to i) identify a hidden factor for unwanted heterogeneity while adjusting for all known factors; ii) test the significance of the putative hidden factor for explaining the unmodeled variation in the data; and iii), if significant, use the estimated factor as an additional known factor in the next iteration to uncover further hidden factors.
Package details |
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Author | Donghyung Lee [aut, cre], Anthony Cheng [aut], Nathan Lawlor [aut], Duygu Ucar [aut] |
Bioconductor views | BatchEffect FeatureExtraction ImmunoOncology Preprocessing QualityControl RNASeq Software StatisticalMethod |
Maintainer | Donghyung Lee <Donghyung.Lee@jax.org>, Anthony Cheng <Anthony.Cheng@jax.org> |
License | GPL-2 |
Version | 1.8.0 |
Package repository | View on Bioconductor |
Installation |
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