PoolScreenExp-class: Class to store pooled CRISPR screening experiment
In gscreend: Analysis of pooled genetic screens
Description
The poolScreenExp class is an S4 class used to store
sgRNA and gene related data as well as parameters necessary
for statistical model.
Slots
sgRNADataA SummarizedExperiment containing
the data related to sgRNAs.
FittingIntervalsA vector defining the limits of the
intervals used for fitting of null model.
LFCModelParametersA vector of parameters estimated
when fitting the null model.
GeneDataSummarizedExperiment containing the
data related to genes.
FittingOptionsA named list with options for fitting:
IntervalFraction - fraction of sgRNAs used in every
fitting interval (default 0.1),
alphaCutoff - alpha cutoff for alpha RRA algorithm (default: 0.05).
gscreend documentation built on Nov. 8, 2020, 7:18 p.m.
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Description
The poolScreenExp class is an S4 class used to store
sgRNA and gene related data as well as parameters necessary
for statistical model.
Slots
sgRNADataA SummarizedExperiment containing the data related to sgRNAs.
FittingIntervalsA vector defining the limits of the intervals used for fitting of null model.
LFCModelParametersA vector of parameters estimated when fitting the null model.
GeneDataSummarizedExperiment containing the data related to genes.
FittingOptionsA named list with options for fitting: IntervalFraction - fraction of sgRNAs used in every fitting interval (default 0.1), alphaCutoff - alpha cutoff for alpha RRA algorithm (default: 0.05).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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