Man pages for gscreend
Analysis of pooled genetic screens
| assignGeneData | Calculate gene rank |
| calculateIntervalFits | Calculate fit parameters for every subset of data |
| calculateLFC | Calculate log fold changes |
| calculatePValues | Calculate p-values |
| createPoolScreenExp | Create PoolScreenExp Experiment |
| createPoolScreenExpFromSE | Create PoolScreenExp Experiment from summarized experiment |
| defineFittingIntervals | Calculate interval limits for splitting data into subsets |
| fit_least_quantile | Fit paramters for skew normal distribution |
| GeneData | GeneData: set and retrieve GeneData of PoolScreenExp |
| GeneData-PoolScreenExp-method | Accessor function for the Gene slot of the PoolScreenExp... |
| normalizePoolScreenExp | Normalize raw count |
| plotModelParameters | Plot model parameters from the fitting |
| plotReplicateCorrelation | Plot replicate correlation |
| PoolScreenExp-class | Class to store pooled CRISPR screening experiment |
| ResultsTable | Extract a results table |
| RunGscreend | run gscreend |
| sgRNAData | sgRNAData: set and retrieve sgRNAData of PoolScreenExp |
| sgRNAData-PoolScreenExp-method | Accessor function for the sgRNA slot of the PoolScreenExp... |
