metaGene_nL: Returns a histogram of the number of reads in each section of...

In groHMM: GRO-seq Analysis Pipeline

Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

Usage

metaGene_nL(features, reads, n_windows = 1000, debug = FALSE, ...)

Arguments

features	A GRanges object representing a set of genomic coordinates.
reads	A GRanges object representing a set of mapped reads.
n_windows	The number of windows to break genes into.
debug	If set to TRUE, provides additional print options. Default: FALSE
...	Extra argument passed to mclapply

Value

Returns a vector representing the 'typical' signal across genes of different length.

Author(s)

Charles G. Danko and Minho Chae

groHMM documentation built on Nov. 8, 2020, 8:09 p.m.