convertIdentifiers: Convert the node identifiers of a pathway.
In graphite: GRAPH Interaction from pathway Topological Environment
Description
Usage
Arguments
Value
See Also
Examples
Description
Converts the node identifiers of pathways.
If the option Ncpus is set to a value larger than 1 and the package
parallel is installed, the conversion procedure will automatically
use multiple cores.
Usage
1
convertIdentifiers(x, to)
Arguments
x
can be a list of pathways or a single pathway
to
a string describing the type of the identifier.
Can assume the values "entrez", "symbol" or the name
of one of the columns provided by an Annotation package (for example,
"UNIPROT").
Value
A Pathway object.
See Also
Examples
1
2
r <- pathways("hsapiens", "reactome")
convertIdentifiers(r$`mTORC1-mediated signalling`, "symbol")
graphite documentation built on Nov. 8, 2020, 8:12 p.m.
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Description Usage Arguments Value See Also Examples
Description
Converts the node identifiers of pathways.
If the option Ncpus is set to a value larger than 1 and the package
parallel is installed, the conversion procedure will automatically
use multiple cores.
Usage
1 | convertIdentifiers(x, to)
|
Arguments
x |
can be a list of pathways or a single pathway |
to |
a string describing the type of the identifier.
Can assume the values |
Value
A Pathway object.
See Also
Examples
1 2 | r <- pathways("hsapiens", "reactome")
convertIdentifiers(r$`mTORC1-mediated signalling`, "symbol")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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