goSTAG_go_genes_rat: goSTAG GO Genes (Rat)

In goSTAG: A tool to use GO Subtrees to Tag and Annotate Genes within a set

Description

A list of GO terms and the rat genes associated with them.

Usage

data(goSTAG_go_genes_rat)

Details

This data is meant for internal goSTAG use.

Value

A list of vectors. Each element of the list corresponds to a GO term, and each vector contains the genes associated with the GO term. The list also has an additional element named "ALL", which is a vector that contains all annotated genes.

Author(s)

Brian D. Bennett
Pierre R. Bushel

References

Bennett BD and Bushel PR. goSTAG: Gene Ontology Subtrees to Tag and Annotate Genes within a set. Source Code Biol Med. 2017 Apr 13.

Examples

data( goSTAG_go_genes_rat )
lapply( head( goSTAG_go_genes_rat ), head )

Example output

$`GO:0006468`
[1] "LOC100912628" "LOC100911169" "LOC100910302" "LOC100910031" "Csnk2a2"     
[6] "Riok3"       

$`GO:0042157`
[1] "LOC100911905" "Apom"         "Ldlr"         "Apoa2"        "Abca1"       
[6] "Apoa1"       

$`GO:0007275`
[1] "Hoxa3"        "LOC100911474" "LOC100912525" "LOC100360577" "Spin1"       
[6] "LOC100363675"

$`GO:0006355`
[1] "Hoxa3"        "LOC100911474" "LOC100912525" "LOC100360577" "Hoxa9"       
[6] "LOC100911710"

$`GO:0006351`
[1] "Hoxa9"        "LOC100911710" "LOC100909740" "Dmrtc1a"      "LOC100909986"
[6] "Polr3a"      

$`GO:0042100`
[1] "Il7r"         "LOC100911254" "Bcl2"         "Ptprc"        "Shb"         
[6] "Cd40lg"      

goSTAG documentation built on Nov. 8, 2020, 7:45 p.m.