plot2D.TrajectorySet: 2D projection of a 'TrajectorySet' object

In flowcatchR: Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells

Description

Provides a bird's eye view of a TrajectorySet object on a bidimensional space

Usage

plot2D.TrajectorySet(
  trajectoryset,
  frames,
  trajIDs = NULL,
  addGrid = FALSE,
  verbose = FALSE,
  ...
)

Arguments

trajectoryset	A TrajectorySet object
frames	A Frames object, used here to identify the limits of the region of interest
trajIDs	A vector containing the ids of the desired trajectories
addGrid	Logical, add an additional grid to the 2-dimensional plot (visual aid for backtracking trajectory point locations)
verbose	Logical, whether to provide additional output on the command line
...	Arguments to be passed to methods

Details

This function extracts the region of interests from the dimensions of an image of the Frames object, and afterwards plots the x-y-time representation of the identified trajectories on a 2d plane. It is possible to subset the TrajectorySet object with the IDs of the desired trajectories

Value

plot2D.TrajectorySet returns an invisible NULL.

Author(s)

Federico Marini, [e-mail], 2014

Examples

data("MesenteriumSubset")
data("candidate.platelets")
platelets.trajectories <- trajectories(candidate.platelets)
plot2D.TrajectorySet(platelets.trajectories,MesenteriumSubset)

flowcatchR documentation built on Nov. 8, 2020, 5:04 p.m.