fs1: Example FCS flowSet
In flowFP: Fingerprinting for Flow Cytometry
Description
Usage
Format
Details
Source
References
Examples
Description
An example FCS flowSet.
Usage
1
Format
This is an object of class flowSet composed of 7
flowFrames.
Details
The flowSet corresponds to a Leukemia/Lymphoma panel for
a sample. Each flowFrame correponds to one tube. The
first one is an isotype control, and the rest are stained with
different antibody cocktails. Parameter 5 (FL3 Log) is notable
in that it is CD45-ECD for all of the tubes. This makes it possible
to gate the entire collection of tubes using CD45 vs SSC. This
set has a very similar distribution of CD45 vs SSC across all 7 tubes.
column names:
FS Lin SS Log FL1 Log FL2 Log FL3 Log FL4 Log FL5 Log
Source
Data were generously provided by Clarient, Inc.
References
W.T. Rogers and H. A. Holyst, “flowFP: A Bioconductor Package for Fingerprinting
Flow Cytometric Data”, Submitted to: Advances in Bioinformatics, April 1, 2009.
Examples
1
Example output
Loading required package: flowCore
Loading required package: flowViz
Loading required package: lattice
flowFP documentation built on Nov. 8, 2020, 8:15 p.m.
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Description Usage Format Details Source References Examples
Description
An example FCS flowSet.
Usage
1 |
Format
This is an object of class flowSet composed of 7 flowFrames.
Details
The flowSet corresponds to a Leukemia/Lymphoma panel for a sample. Each flowFrame correponds to one tube. The first one is an isotype control, and the rest are stained with different antibody cocktails. Parameter 5 (FL3 Log) is notable in that it is CD45-ECD for all of the tubes. This makes it possible to gate the entire collection of tubes using CD45 vs SSC. This set has a very similar distribution of CD45 vs SSC across all 7 tubes.
column names: FS Lin SS Log FL1 Log FL2 Log FL3 Log FL4 Log FL5 Log
Source
Data were generously provided by Clarient, Inc.
References
W.T. Rogers and H. A. Holyst, “flowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data”, Submitted to: Advances in Bioinformatics, April 1, 2009.
Examples
1 |
Example output
Loading required package: flowCore
Loading required package: flowViz
Loading required package: lattice
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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