tcga_colon_expression: Example exon-level RNAseq data from TCGA project for epivizr...
In epivizr: R Interface to epiviz web app

Description Usage Format Value Source

A SummarizedExperiment::RangedSummarizedExperiment object containing exon-level counts from RNAseq data for colon tumor and normal tissue from the TCGA project. Only exons in human chromosome 11 are included.

1	data(tcga_colon_expression)

A SummarizedExperiment::RangedSummarizedExperiment object with 12,800 rows (exons) and 40 samples.

assay(tcga_colon_expression): exon-level count matrix
colData(tcga_colon_expression): a DataFrame containing sample information. Normal/Tumor status is given in column sample_type

A SummarizedExperiment::RangedSummarizedExperiment object.

TCGA project: https://tcga-data.nci.nih.gov/tcga/

epivizr documentation built on Nov. 8, 2020, 8:24 p.m.