runtimeOptions: VEPParam runtime options

In ensemblVEP: R Interface to Ensembl Variant Effect Predictor

Description

Runtime options for the most current API version of the Ensembl Variant Effect Predictor.

Details

VEPFlags objects store the runtime options for querying the Ensembl Variant Effect Predictor (VEP). This page describes only the most current runtime options and is a condensed version of what is listed on the Ensembl web site:

http://uswest.ensembl.org/info/docs/tools/vep/script/vep_options.html

Runtime options for archived versions can be found on the corresponding archive page.

http://useast.ensembl.org/info/website/archives/index.html

Author(s)

Lori Shepherd

See Also

• The ensemblVEP function man page.

• The VEPFlags class man page.

Examples

  ## See ?VEPFlags for examples of constructing instances of a
  ## VEPFlags object with different runtime options.

ensemblVEP documentation built on March 16, 2021, 6:01 p.m.