barplot.enrichResult: barplot

In enrichplot: Visualization of Functional Enrichment Result

Description

barplot of enrichResult

Usage

## S3 method for class 'enrichResult'
barplot(
  height,
  x = "Count",
  color = "p.adjust",
  showCategory = 8,
  font.size = 12,
  title = "",
  label_format = 30,
  ...
)

Arguments

height	enrichResult object
x	one of 'Count' and 'GeneRatio'
color	one of 'pvalue', 'p.adjust', 'qvalue'
showCategory	number of categories to show
font.size	font size
title	plot title
label_format	a numeric value sets wrap length, alternatively a custom function to format axis labels. by default wraps names longer that 30 characters
...	other parameter, ignored

Value

ggplot object

Examples

library(DOSE)
data(geneList)
de <- names(geneList)[1:100]
x <- enrichDO(de)
barplot(x)

Example output

DOSE v3.16.0  For help: https://guangchuangyu.github.io/software/DOSE

If you use DOSE in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609

enrichplot documentation built on Jan. 30, 2021, 2:01 a.m.