iqr_replicates: Removes features with replicated annotation.

In crossmeta: Cross Platform Meta-Analysis of Microarray Data

Description

For rows with duplicated annot, highested IQR retained.

Usage

iqr_replicates(eset, annot = "SYMBOL", rm.dup = FALSE)

Arguments

annot	feature to use to remove replicates.
rm.dup	remove duplicates (same measure, multiple ids)? Used for Pathway analysis so that doesn't treat probes that map to multiple genes as distinct measures.
mod	Model matrix without surrogate variables. generated by diff_setup.
svobj	Result from sva function called during diff_setup.

Value

Expression set with unique features at probe or gene level.

crossmeta documentation built on Nov. 8, 2020, 8 p.m.