summarizeWindowStd: Combines neighbouring locations to windows
In cn.farms: cn.FARMS - factor analysis for copy number estimation

Description Usage Arguments Value Author(s) Examples

Combines neighbouring locations to windows

1	summarizeWindowStd(phInf, windowSize = 3, overlap = TRUE)

`phInf`	The locations on the chromosomes.
`windowSize`	Size of how many Locations should be combined.
`overlap`	States if the windows should overlap.

Indices for summarization

Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at

## create toy physical data
sizeTmp <- 30
phInf <- data.frame(
        chrom = rep("15", sizeTmp),
        start = seq(from = 1, by = 300, length.out = sizeTmp),
        end = seq(from = 3600, by = 300, length.out = sizeTmp),
        man_fsetid = paste("SNP_A-", seq(sizeTmp)+1000, sep = ""))
summarizeWindowStd(phInf)