scores: chromstaR scores
In chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
Description
Usage
Arguments
Value
Functions
Author(s)
Description
Various scores used in chromstaR.
Usage
1
2
3
differentialScoreMax(mat, info, FUN = "-")
differentialScoreSum(mat, info, FUN = "-")
Arguments
mat
A matrix with posterior probabilities, read counts or any other matrix with these dimensions. Column names must correspond to the ID entries in info.
info
An experiment.table with additional column 'ID'.
FUN
A function to compute the score with.
Value
A numeric vector.
Functions
-
differentialScoreMax: Maximum differential score. Values are between 0 and 1. A value of 1 means that at least one mark is maximally different between conditions.
-
differentialScoreSum: Additive differential score. Values are between 0 and N, where N is the number of marks. A value around 1 means that approximately 1 mark is different, a value of 2 means that 2 marks are different etc.
Author(s)
Aaron Taudt
chromstaR documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Value Functions Author(s)
Description
Various scores used in chromstaR.
Usage
1 2 3 | differentialScoreMax(mat, info, FUN = "-")
differentialScoreSum(mat, info, FUN = "-")
|
Arguments
mat |
A matrix with posterior probabilities, read counts or any other matrix with these dimensions. Column names must correspond to the ID entries in |
info |
An |
FUN |
A function to compute the score with. |
Value
A numeric vector.
Functions
-
differentialScoreMax: Maximum differential score. Values are between 0 and 1. A value of 1 means that at least one mark is maximally different between conditions. -
differentialScoreSum: Additive differential score. Values are between 0 and N, where N is the number of marks. A value around 1 means that approximately 1 mark is different, a value of 2 means that 2 marks are different etc.
Author(s)
Aaron Taudt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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