API for chipseq
chipseq: A package for analyzing chipseq data
| Global functions | |
|---|---|
| .estimate.mean.fraglen | Source code |
| .genomicContext | Source code |
| .nearestTss | Source code |
| applyPosByChrAndStrand | Source code |
| basesCovered | Man page Source code |
| chipseqFilter | Man page Source code |
| correlation.estimate | Source code |
| correlationProfile | Source code |
| coverage.estimate | Source code |
| coverageplot | Man page Source code |
| cstest | Man page |
| dKernel | Source code |
| densityCorr | Man page |
| densityCorr,GenomicRanges | Man page |
| densityCorr,list | Man page |
| diffPeakSummary | Man page |
| diffPeakSummary,RleViewsList,RleViewsList-method | Man page |
| doDensity1 | Source code |
| doDensity2 | Source code |
| doDensity3 | Source code |
| estimate.bg.rate | Source code |
| estimate.mean.fraglen | Man page |
| estimate.mean.fraglen,AlignedRead-method | Man page |
| estimate.mean.fraglen,GRanges-method | Man page |
| islandDepthPlot | Man page Source code |
| jothi.estimate | Source code |
| laneSubsample | Man page Source code |
| peakCutoff | Man page Source code |
| peakSummary | Man page |
| peakSummary,RleViews-method | Man page |
| peakSummary,RleViewsList-method | Man page |
| peakSummary-methods | Man page |
| removeIsolated | Source code |
| similarity.corr | Source code |
| sparse.density | Man page Source code |
| subsetSummary | Man page Source code |
