import_squid: Import results from a SQUID run into a list of Fusion...
In chimeraviz: Visualization tools for gene fusions

Description Usage Arguments Value Examples

A function that imports the results from a SQUID run into a list of Fusion objects.

1	import_squid(filename, genome_version, limit)

`filename`	Filename for the SQUID results.
`genome_version`	Which genome was used in mapping (hg19, hg38, etc.).
`limit`	A limit on how many lines to read.

A list of Fusion objects.

squidfile <- system.file(
  "extdata",
  "squid_hcc1954_sv.txt",
  package="chimeraviz")
fusions <- import_squid(squidfile, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.