Files in casper
Characterization of Alternative Splicing based on Paired-End Reads
NAMESPACE
DESCRIPTION
src/cstat.h
src/fragment.cpp
src/header.h
src/dropVariant.cpp
src/dataframe.h
src/dataframe.cpp
src/simReadsfunc.c
src/variant.cpp
src/uniqQname.c
src/cstat.cpp
src/fragFunc.h
src/functions.h
src/fragFunc.c
src/makeIslands.c
src/stdafx.h
src/model.cpp
src/cppmemory.h
src/casper.cpp
src/smartmodeldist.cpp
src/discretedf.h
src/seppel.h
src/dropVariant.h
src/fragment.h
src/variant.h
src/functions.c
src/model_cmp.cpp
src/seppel.cpp
src/join_exons.c
src/rcasper.cpp
src/exon.h
src/discretedf.cpp
src/casper.h
src/hash.c
src/model.h
src/exon.cpp
src/simReadsfunc.h
src/rcasper.h
src/model_cmp.h
src/pathCounts.c
src/hash.h
src/procBam.c
src/variant_cmp.cpp
src/variant_cmp.h
src/targetver.h
src/simReads.c
R/procGenome.R
R/truncnorm.R
R/createDenovoGenome.R
R/simReads.R
R/getDistrs.R
R/calcDenovo.R
R/rmShortInserts.R
R/wrapKnown.R
R/casperVignettes.R
R/qqnormGenomeWide.R
R/wrapDenovo.R
R/relexprByGene.R
R/simMultSamples.R
R/procBam.R
R/genePlot.R
R/mergeExp.R
R/mergeBatches.R
R/asymmetryCheck.R
R/ClassDefinitions.R
R/makeTranscriptDbFromGFF.R
R/modelPrior.R
R/checks.R
R/simPost.R
R/getRoc.R
R/pathCounts.R
R/calcExp.R
R/probNonEquiv.R
R/GenericDefs.R
R/splitGenomeByLength.R
R/denovoExpr.R
man/getRoc.Rd
man/getNreads.Rd
man/procBam.Rd
man/subsetGenome.Rd
man/denovoGenomeExpr-class.Rd
man/splitGenomeByLength.Rd
man/plot-methods.Rd
man/qqnormGenomeWide.Rd
man/simMAEcheck.Rd
man/distrsGSE37704.Rd
man/simMAE.Rd
man/denovoExpr.Rd
man/asymmetryCheck.Rd
man/transcripts.Rd
man/pathCounts-class.Rd
man/hg19DB.Rd
man/relexprByGene.Rd
man/probNonEquiv.Rd
man/rmShortInserts.Rd
man/genePlot.Rd
man/wrapKnown.Rd
man/denovoGeneExpr-class.Rd
man/simReads.Rd
man/procBam-class.Rd
man/getReads.Rd
man/wrapDenovo.Rd
man/mergeExp.Rd
man/quantileNorm.Rd
man/modelPriorAS-class.Rd
man/calcExp.Rd
man/mergeBatches.Rd
man/K562.r1l1.Rd
man/getDistrs.Rd
man/annotatedGenome-class.Rd
man/getIsland.Rd
man/simMultSamples.Rd
man/modelPrior.Rd
man/procGenome.Rd
man/calcDenovo.Rd
man/plotExpr.Rd
man/simulatedSamples-class.Rd
man/txLength-methods.Rd
man/pathCounts.Rd
man/plotPriorAS.Rd
inst/CITATION
inst/doc/casper.Rnw
inst/doc/casper.pdf
inst/doc/DesignRNASeq.pdf
inst/doc/casper.R
data/K562.r1l1.RData
data/datalist
data/hg19DB.RData
data/distrsGSE37704.RData
build/vignette.rds
vignettes/casper.Rnw
vignettes/references.bib
vignettes/auto/casper.el
